Cotton Science

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Genetic Dissection of Allelic Loci Associated with Economic Traits of Upland Cottons in Xinjiang

Lei Jiejie, Shao Panxia, Guo Chunping, Zhang Dawei, Tang Binghui, Nurimanguli Aini, Peng Yajuan, Cui Tianyu, Zhang Aoshen, Lin Hairong, Lin Zhongxu, You Chunyuan, Nie Xinhui

Cotton Science, 2020, 32(3): 185-198. DOI: 10.11963/1002-7807.ljjnxh.20200509

标记 Locus	染色体 Chr	物理位置 /bp	本研究的性状 Traits in this study	已报道研究的性状及文献 Reported traits and references
NAU4022	Chr14	198	BW, LW, LP, FU, FE	FS^[19]
NAU3774	Chr26	293	BW, LW, FM	FU^[20], BW^[21], MV^[22], LW^[21,22]
HAU2770	Chr21	276	LW, LP, MV	LP^[21,22]
DPL0062	Chr21	137	LW, FUHML, FU	MV^[21,22]
MON_CGR6812	Chr13	186	LP	MV^[22]
MGHES31	Chr12	266	FS	MV^[23], BW^[24]
BNL3043	Chr19	296	BW, SF, FE, LP	MV^[25], FS^[10]
NBRI_HQ526730	Chr01	274	FUHML, FS, FU, FE, LW	SI^[23], FE^[23]
DPL0238	Chr06	200	BW, LP, FU, SF	PH^[27], LW^[27]
NAU2985	Chr15	285	FM	PH^[26,27], FUHML^[28], MV^[28]
NAU3913	Chr14	279	BW, LW, FS, MV, FU, FE, LP, FUHML, SF	PH^[29], FE^[30]
BNL3031	Chr09	162	BW, LP, FS, LW, LP, MV	DI^[31], FUHML^{[23, 32]}, BW^[24], BN^[33], LW^[34,35], SI^[36], MV^{[24, 34]}, FS^[36], FE^[37]
BNL2449	Chr13	183	BW, FUHML, MV, FE, LP	LP^[38], FU^[39]
NAU3736b	Chr01	213	LW, FUHML, FU, SF	LP^[10], LW^[10]
NAU3433	Chr15	347	LW, MV	FUHML^[40,41]
NAU3298	Chr25	385	LW, LP	PFSC^[42], FS^[39], FM^[39], FUHML^[39], FE^[39]
NAU2126	Chr19	186	LW, FUHML, FS, FU, SF	DI^[43], LW^[44], FUHML^[45,46], Fat^[47], ER^[48]
MON_CGR6012	Chr12	162	LW, LP, FUHML, FS, SF, MV, FM, FU	FUHML^[45], BS^[49]
MON_CGR5732	Chr05	155	LW, FUHML, FE	LP^[49], FS^[45]
NAU2240	Chr24	281	LP, FM, FU, SF	FS^[50], FU^[51,52]
NAU2631	Chr24	263	FUHML	BW^[53], FS^[50], EBN^[10], DFF^[54]
MGHES31	Chr12	266	FM, FE, SF	MV^[23], BW^[24]

Table 4 Comparison of the association loci in this study and in previously reported

Other figure/table from this article

Fig. 1 Boxplot diagram of 10 traits in Shihezi and Korla regions from 2016 to 2018 The ends of boxplot, the circles out of both ends of boxplot, and the bold lines in the middle show the extreme range, single the maximum and minimum value, and the mean of phenotypic value of the targeted trait, respectively.
Table 1 Correlation results of yield and quality traits of cotton cultivars in Xinjiang under six environments
Fig. 2 The linkage disequilibrium of 73 SSR markers on 26 chromosomes in Xinjiang upland cotton cultivars
Fig. 3 Lines graph of K value with ln(P(D)) value and ΔK value based on structure analysis A: Line chart of K value and lnP (D); B: Line chart of ΔK changing with K values.
Fig. 4 Population genetic structure of 156 Xinjiang upland cotton cultivars based on 73 SSR markers
Table 2 SSR locus associated with yield and fiber quality related traits
Table 3 Allelic variation of loci significantly associated with yield and fiber quality traits and corresponding phenotypic effects and typical carrier materials
Table S1 The information of cotton varieties (lines) used in the study
Table S2 Statistics on the diversity of 73 pairs of SSR and SSCP markers
Table S3 Tests of the economic traits of upland cotton variety in Xinjiang under different environments

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