Cotton Science

Genetic diversity and haplotype analysis of cotton Fusarium wilt based on gene sequences of EF-1α and β-tubulin

Wang Haiying, Chen Xiaohai, Zhong Yeyi, Gong Juwu, Liu Ping, Chin Yaoxian, Wang Peizheng, Yuan Youlu

Cotton Science, 2023, 35(4): 334-344. DOI: 10.11963/cs20220060

基因 Gene	序列长度 Sequence length/bp	单倍型个数 Number of haplotypes	单倍型多态性 Haplotype diversity	核苷酸多样性 Nucleotide diversity
EF-1α	611	19	0.876	0.010 56
β-tubulin	370	9	0.812	0.238 73

Table 2 Haplotype characteristics of EF-1α and β-tubulin gene

Other figure/table from this article

Table 1 GenBank accession number of EF-1α and β-tubulin gene of cotton Fusarium wilt
Fig. 1 Phylogenetic tree based on EF-1α gene sequence of cotton Fusarium wilt strains The value on each branch is the degree of genetic variation, which indicates the frequency of base replacement at each site in the gene. The calculation formula is: degree of variation = the number of mutated bases/the total number of bases.
Fig. 2 Phylogenetic tree based on β-tubulin gene sequence of cotton Fusarium wilt strains The value on each branch is the degree of genetic variation, which indicates the frequency of base replacement at each site in the gene. The calculation formula is: degree of variation = the number of mutated bases/the total number of bases.
Fig. 3 Haplotype network map constructed based on EF-1α gene sequence The number of short horizontal lines indicates the number of mutated bases between two haplotypes.
Table 3 Haplotype analysis based on EF-1α gene sequence
Fig. 4 Haplotype network map constructed based on β-tubulin gene sequence The number of short horizontal lines indicates the number of mutated bases between two haplotypes.
Table 4 Haplotype analysis based on β-tubulin gene sequence