Cotton Science

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Genetic diversity and haplotype analysis of cotton Fusarium wilt based on gene sequences of EF-1α and β-tubulin

Wang Haiying, Chen Xiaohai, Zhong Yeyi, Gong Juwu, Liu Ping, Chin Yaoxian, Wang Peizheng, Yuan Youlu

Cotton Science, 2023, 35(4): 334-344. DOI: 10.11963/cs20220060

菌株Strain	来源Origin	EF-1α基因序列登录号 Accession number of EF-1α gene sequence	β-tubulin基因序列登录号 Accession number of β-tubulin gene sequence
Race1 CA10	美国加利福尼亚州 State of California, United States	AY714099	―
Race1 ATCC16421	美国南卡罗来纳州 South Carolina, United States	JF267540.1	JF267598.1
Race1 ATCC46644	美国加利福尼亚州 State of California, United States	JF267541.1	JF267599.1
Race2 ATCC16611(1)	美国 United States	EU246547.1	AY714091.1
Race2 ATCC16611(2)	美国 United States	AY714105	―
Race3 CN3	中国 China	KP192925	KP175340
Race3 CA3	美国加利福尼亚州 State of California, United States	AY714102.1	AY714088.1
Race3 ATCC16612	埃及 Egypt	AY714106.2	AY714092.1
Race4 ATCC16613	印度 India	JF267548	AY714093
Race4 CA14	美国加利福尼亚州 State of California, United States	JF267549	AY714086
Race6 ATCC36198	巴西 Brazil	JF267543	AY714089
Race7 CN7	中国 China	KP192916	KP195331
Race8 CN8	中国 China	KP192915	KP175330
Race8 ATCC31665	中国 China	AY714108	AY714095
Race8 CA1	美国加利福尼亚州 State of California, United States	JF267546	AY714087
Aus Type Aust 16	澳大利亚 Australia	AY714096	AY714082
Aus Type Aust 19	澳大利亚 Australia	AY714097	AY714083
Aus Type ATCC96291	澳大利亚 Australia	KP212130	KP212129
AuK24301	澳大利亚 Australia	JF267568.1	―
AuK24299	澳大利亚 Australia	JF267567.1	―
Fov218	澳大利亚 Australia	JF267542	―
HB7	中国河北 Hebei, China	KP192917	KP175332
HB8-2	中国河北 Hebei，China	KP192918	KP175333
HB48	中国河北 Hebei, China	KP192919	KP175334
HB70	中国河北 Hebei, China	KP192920	KP175335
HB114	中国河北 Hebei, China	KP192921	KP175336
HB120	中国河北 Hebei, China	KP192922	KP175337
HB180-2	中国河北 Hebei, China	KP192923	KP175338
CC-613-4	美国加利福尼亚州 State of California, United States	AY714107	―
CC-611-2	美国加利福尼亚州 State of California, United States	AY714105	―
CA11	美国加利福尼亚州 State of California, United States	AY714100.1	―
LA112	美国 United States	FJ466733	―
LA140	美国 United States	FJ466735.1	―
FovE-1	埃及 Egypt	DQ086833.1	―
BBA65934	―	AF362165.1	―
BBA69711	―	AF362161.1	―

Table 1 GenBank accession number of EF-1α and β-tubulin gene of cotton Fusarium wilt

Other figure/table from this article

Fig. 1 Phylogenetic tree based on EF-1α gene sequence of cotton Fusarium wilt strains The value on each branch is the degree of genetic variation, which indicates the frequency of base replacement at each site in the gene. The calculation formula is: degree of variation = the number of mutated bases/the total number of bases.
Fig. 2 Phylogenetic tree based on β-tubulin gene sequence of cotton Fusarium wilt strains The value on each branch is the degree of genetic variation, which indicates the frequency of base replacement at each site in the gene. The calculation formula is: degree of variation = the number of mutated bases/the total number of bases.
Table 2 Haplotype characteristics of EF-1α and β-tubulin gene
Fig. 3 Haplotype network map constructed based on EF-1α gene sequence The number of short horizontal lines indicates the number of mutated bases between two haplotypes.
Table 3 Haplotype analysis based on EF-1α gene sequence
Fig. 4 Haplotype network map constructed based on β-tubulin gene sequence The number of short horizontal lines indicates the number of mutated bases between two haplotypes.
Table 4 Haplotype analysis based on β-tubulin gene sequence

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