Fig. 6 Analysis of the LP-related QTL qLP-Gh17.2 on chromosome D04 A: Manhattan plot of association mapping of LP based on BLUP value in GLM (Q) model; B: Localized Manhattan plot around the peak region on chromosome D04, with red arrows indicating snp2180718 in qLP-Gh12.43; C: Boxplot of LP based on the snp2180718 genotype; **, ***, and **** represent significant difference at the 0.01, 0.001, and 0.000 1 probability levels, respectively. D: LD heat map of SNP in the 3.80-3.96 Mb interval.
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