Li Xiaona, Cai Xiaoyan, Kiflom Weldu Okubazghi, Wang Xingxing, Wang Chunying, Liu Fang, Zhou Zhongli, Li Cheng, Wang Yuhong, Zhu Shuijin, Peng Renhai, Wang Kunbo
The study objectives were to estimate genetic diversity, population structure, and identify loci associated with cottonseed oil content in Gossypium hirsutum L. To do this, 89 G. hirsutum L. races accessions, and 215 pairs of SSR molecular markers were compared. Genetic diversity, population structure, and association mapping analysis were conducted using different software packages. The results showed that the polymorphism information content of the SSR markers ranged from 0.0222 to 0.7390 with a mean of 0.3452. The Shannon-Wiener diversity index(H') ranged from 0.0616 to 1.4412 with a mean of 0.5614. Population structure analysis divided the 89 accessions into two subpopulations. The 89 accessions had extensive genetic variation and a simple population structure, which revealed the natural population to be representative for further association analysis of quantitative traits in cotton. Association analysis showed that 12 markers were significantly associated with cottonseed oil content(P<0.05) over 3 successive years. Of all the accessions, LAT141 had the highest average cottonseed Kernel oil content (41.90 %), revealing its potential to be exploited as a good source of high oil content. The findings of this study could be used in genetic improvement of cottonseed oil content of cultivated Gossypium species through marker assisted selective breeding programs, and could also be utilized as a reference database for mapping other agronomic qualities of semi-wild accessions.